To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicScores")

In most cases, you don't need to download the package archive at all.

GenomicScores

DOI: 10.18129/B9.bioc.GenomicScores    

Infrastructure to work with genomewide position-specific scores

Bioconductor version: Release (3.6)

Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.

Author: Robert Castelo [aut, cre], Pau Puigdevall [ctb]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("GenomicScores")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicScores")

Documentation

HTML R Script An introduction to the GenomicScores package
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Coverage, Genetics, Infrastructure, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 3.5 (R-3.4) (0.5 years)
License Artistic-2.0
Depends R (>= 3.4), S4Vectors(>= 0.7.21), GenomicRanges, methods, BiocGenerics(>= 0.13.8)
Imports utils, XML, Biobase, IRanges(>= 2.3.23), BSgenome, GenomeInfoDb, AnnotationHub
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19, phastCons100way.UCSC.hg19, MafDb.1Kgenomes.phase1.hs37d5, SNPlocs.Hsapiens.dbSNP144.GRCh37, VariantAnnotation, TxDb.Hsapiens.UCSC.hg19.knownGene, gwascat
SystemRequirements
Enhances
URL https://github.com/rcastelo/GenomicScores
BugReports https://github.com/rcastelo/GenomicScores/issues
Depends On Me fitCons.UCSC.hg19, MafDb.1Kgenomes.phase1.hs37d5, MafDb.1Kgenomes.phase3.hs37d5, MafDb.ESP6500SI.V2.SSA137.GRCh38, MafDb.ESP6500SI.V2.SSA137.hs37d5, MafDb.ExAC.r1.0.hs37d5, MafDb.ExAC.r1.0.nonTCGA.hs37d5, MafDb.gnomAD.r2.0.1.hs37d5, MafDb.gnomADex.r2.0.1.hs37d5, MafDb.TOPMed.freeze5.hg38, phastCons100way.UCSC.hg19, phastCons100way.UCSC.hg38, phastCons7way.UCSC.hg38
Imports Me ATACseqQC, RareVariantVis, VariantFiltering
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicScores_1.2.0.tar.gz
Windows Binary GenomicScores_1.2.0.zip
Mac OS X 10.11 (El Capitan) GenomicScores_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicScores
Package Short Url http://bioconductor.org/packages/GenomicScores/
Package Downloads Report Download Stats

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