To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicScores")

In most cases, you don't need to download the package archive at all.

GenomicScores

 

Infrastructure to work with genomewide position-specific scores

Bioconductor version: Release (3.5)

Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.

Author: Robert Castelo [aut, cre], Pau Puigdevall [ctb]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("GenomicScores")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicScores")

Documentation

HTML R Script An introduction to the GenomicScores package
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Coverage, Genetics, Infrastructure, Sequencing, Software
Version 1.0.1
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License Artistic-2.0
Depends R (>= 3.4), S4Vectors(>= 0.7.21), GenomicRanges, methods, BiocGenerics(>= 0.13.8)
Imports utils, XML, IRanges(>= 2.3.23), BSgenome, GenomeInfoDb, AnnotationHub
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19, phastCons100way.UCSC.hg19, VariantAnnotation, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://github.com/rcastelo/GenomicScores
BugReports https://github.com/rcastelo/GenomicScores/issues
Depends On Me fitCons.UCSC.hg19, phastCons100way.UCSC.hg19, phastCons100way.UCSC.hg38, phastCons7way.UCSC.hg38
Imports Me ATACseqQC, RareVariantVis, VariantFiltering
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GenomicScores_1.0.1.tar.gz
Windows Binary GenomicScores_1.0.1.zip
Mac OS X 10.11 (El Capitan) GenomicScores_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicScores
Package Short Url http://bioconductor.org/packages/GenomicScores/
Package Downloads Report Download Stats

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