nucleR

DOI: 10.18129/B9.bioc.nucleR    

Nucleosome positioning package for R

Bioconductor version: Release (3.7)

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Ricard Illa <r.illa.pujagut at gmail.com>

Citation (from within R, enter citation("nucleR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")

 

PDF R Script Vignette Title
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software
Version 2.12.1
In Bioconductor since BioC 2.9 (R-2.14) (7 years)
License LGPL (>= 3)
Depends methods
Imports Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils
LinkingTo
Suggests Starr, BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nucleR_2.12.1.tar.gz
Windows Binary nucleR_2.12.1.zip
Mac OS X 10.11 (El Capitan) nucleR_2.12.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nucleR
Package Short Url http://bioconductor.org/packages/nucleR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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