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mfa

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mfa.

All versions 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations


Bioconductor version: Release (3.23)

MFA models genomic bifurcations using a Bayesian hierarchical mixture of factor analysers.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("mfa")):

Kieran Campbell. mfa: Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations. doi:10.18129/B9.bioc.mfa, R package version 1.34.0, https://bioconductor.org/packages/mfa.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mfa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF

Details

biocViews Bayesian, GeneExpression, ImmunoOncology, RNASeq, SingleCell, Software
Version1.34.0
In Bioconductor sinceBioC 3.6 (R-3.4) (9 years)
License GPL (>= 2)
Depends R (>= 3.4.0)
Imports methods, stats, ggplot2, Rcpp, dplyr, ggmcmc, MCMCpack, MCMCglmm, coda, magrittr, tibble, Biobase
System Requirements
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Suggests knitr, rmarkdown, BiocStyle, testthat
Linking To Rcpp
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/mfa
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/mfa
Package Short Url https://bioconductor.org/packages/mfa/
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