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affyContam

structured corruption of affymetrix cel file data


Bioconductor version: Release (3.18)

structured corruption of cel file data to demonstrate QA effectiveness

Author: V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("affyContam")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyContam")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyContam")
affy contamination tools PDF R Script
Reference Manual PDF

Details

biocViews Infrastructure, Software
Version 1.60.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License Artistic-2.0
Depends R (>= 2.7.0), tools, methods, utils, Biobase, affy, affydata
Imports
System Requirements
URL
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Suggests hgu95av2cdf
Linking To
Enhances
Depends On Me
Imports Me arrayMvout
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affyContam_1.60.0.tar.gz
Windows Binary affyContam_1.60.0.zip
macOS Binary (x86_64) affyContam_1.60.0.tgz
macOS Binary (arm64) affyContam_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affyContam
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyContam
Bioc Package Browser https://code.bioconductor.org/browse/affyContam/
Package Short Url https://bioconductor.org/packages/affyContam/
Package Downloads Report Download Stats