To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("UNDO")

In most cases, you don't need to download the package archive at all.

UNDO

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

Bioconductor version: Release (3.0)

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Author: Niya Wang <wangny at vt.edu>

Maintainer: Niya Wang <wangny at vt.edu>

Citation (from within R, enter citation("UNDO")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("UNDO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UNDO")

 

PDF R Script UNDO Demo
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.8.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends R (>= 2.15.2), methods, BiocGenerics, Biobase
Imports MASS, boot, nnls, stats, utils
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source UNDO_1.8.0.tar.gz
Windows Binary UNDO_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) UNDO_1.8.0.tgz
Mac OS X 10.9 (Mavericks) UNDO_1.8.0.tgz
Browse/checkout source (username/password: readonly)
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