To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("UNDO")

In most cases, you don't need to download the package archive at all.

UNDO

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

Bioconductor version: Release (3.1)

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Author: Niya Wang <wangny at vt.edu>

Maintainer: Niya Wang <wangny at vt.edu>

Citation (from within R, enter citation("UNDO")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("UNDO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UNDO")

 

PDF R Script UNDO Demo
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.10.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends R (>= 2.15.2), methods, BiocGenerics, Biobase
Imports MASS, boot, nnls, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source UNDO_1.10.0.tar.gz
Windows Binary UNDO_1.10.0.zip
Mac OS X 10.6 (Snow Leopard) UNDO_1.10.0.tgz
Mac OS X 10.9 (Mavericks) UNDO_1.10.0.tgz
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