signatureSearchData

DOI: 10.18129/B9.bioc.signatureSearchData    

Datasets for signatureSearch package

Bioconductor version: Release (3.10)

CMAP/LINCS hdf5 databases and other annotations used for signatureSearch software package.

Author: Yuzhu Duan <yduan004 at ucr.edu>, Thomas Girke <thomas.girke at ucr.edu>

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("signatureSearchData")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("signatureSearchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("signatureSearchData")

 

HTML R Script signatureSearchData
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, ExperimentHub, ExpressionData
Version 1.0.0
License Artistic-2.0
Depends R (>= 3.6)
Imports ExperimentHub, utils, affy, limma, Biobase, magrittr, dplyr, R.utils, stats, signatureSearch, rhdf5
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package signatureSearchData_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/signatureSearchData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/signatureSearchData
Package Short Url https://bioconductor.org/packages/signatureSearchData/
Package Downloads Report Download Stats

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