To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("M3Drop")

In most cases, you don't need to download the package archive at all.

M3Drop

DOI: 10.18129/B9.bioc.M3Drop    

Michaelis-Menten Modelling of Dropouts in single-cell RNASeq

Bioconductor version: Release (3.6)

This package fits a Michaelis-Menten model to the pattern of dropouts in single-cell RNASeq data. This model is used as a null to identify significantly variable (i.e. differentially expressed) genes for use in downstream analysis, such as clustering cells.

Author: Tallulah Andrews <tallulandrews at gmail.com>

Maintainer: Tallulah Andrews <tallulandrews at gmail.com>

Citation (from within R, enter citation("M3Drop")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("M3Drop")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("M3Drop")

 

PDF R Script Introduction to M3Drop
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews DifferentialExpression, DimensionReduction, FeatureExtraction, GeneExpression, RNASeq, Sequencing, Software, Transcriptomics
Version 1.4.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License GPL (>=2)
Depends R (>= 3.3), numDeriv
Imports RColorBrewer, gplots, bbmle, statmod, grDevices, graphics, stats
LinkingTo
Suggests ROCR, knitr, M3DExampleData
SystemRequirements
Enhances
URL https://github.com/tallulandrews/M3Drop
BugReports https://github.com/tallulandrews/M3Drop/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package M3Drop_1.4.0.tar.gz
Windows Binary M3Drop_1.4.0.zip
Mac OS X 10.11 (El Capitan) M3Drop_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/M3Drop
Package Short Url http://bioconductor.org/packages/M3Drop/
Package Downloads Report Download Stats

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