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Somatic Signatures

Bioconductor version: Release (3.0)

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).

Author: Julian Gehring (EMBL Heidelberg)

Maintainer: Julian Gehring <julian.gehring at>

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biocViews Clustering, GenomicVariation, Sequencing, Software, SomaticMutation, StatisticalMethod, Visualization
Version 2.2.3
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.2), VariantAnnotation, GenomicRanges
Imports S4Vectors, IRanges, GenomeInfoDb, Biostrings, ggplot2, ggbio, reshape2, NMF, pcaMethods, Biobase, methods, proxy
Suggests testthat, knitr, parallel, BSgenome.Hsapiens.UCSC.hg19, SomaticCancerAlterations, COSMIC.67, ggdendro, fastICA
System Requirements
Depends On Me
Imports Me Rariant
Suggests Me

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Package Source SomaticSignatures_2.2.3.tar.gz
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