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This is the development version of SomaticSignatures; for the stable release version, see SomaticSignatures.

Somatic Signatures

Bioconductor version: Development (3.0)

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).

Author: Julian Gehring, Bernd Fischer (EMBL Heidelberg)

Maintainer: Julian Gehring <julian.gehring at>

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biocViews Cancer, Clustering, GenomicVariation, HighThroughputSequencingData, PrinicpalComponent, Sequencing, Software, SomaticMutation, StatisticalMethod, Visualization
Version 1.1.11
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.2)
Imports GenomeInfoDb, GenomicRanges, IRanges, VariantAnnotation, Biostrings, ggplot2, ggbio, stringr, reshape2, NMF, methods, pcaMethods, fastICA, gtools
Suggests testthat, knitr, parallel, BSgenome.Hsapiens.UCSC.hg19, SomaticCancerAlterations, h5vc, h5vcData, COSMIC.67
System Requirements
Depends On Me
Imports Me Rariant
Suggests Me

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Package Source SomaticSignatures_1.1.11.tar.gz
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Mac OS X 10.6 (Snow Leopard) SomaticSignatures_1.1.11.tgz
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