To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HTSFilter")

In most cases, you don't need to download the package archive at all.

HTSFilter

 

Filter replicated high-throughput transcriptome sequencing data

Bioconductor version: Release (3.1)

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic

Maintainer: Andrea Rau <andrea.rau at jouy.inra.fr>

Citation (from within R, enter citation("HTSFilter")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HTSFilter")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HTSFilter")

 

PDF R Script HTSFilter Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, Normalization, Preprocessing, RNASeq, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 2.12 (R-3.0) (2 years)
License Artistic-2.0
Depends methods, Biobase(>= 2.27.3), R (>= 3.2)
Imports DESeq(>= 1.19.0), edgeR(>= 3.9.14), DESeq2(>= 1.6.3)
LinkingTo
Suggests EDASeq(>= 2.1.4), BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HTSFilter_1.8.0.tar.gz
Windows Binary HTSFilter_1.8.0.zip
Mac OS X 10.6 (Snow Leopard) HTSFilter_1.8.0.tgz
Mac OS X 10.9 (Mavericks) HTSFilter_1.8.0.tgz
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