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davidTiling

 

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Bioconductor version: Release (3.1)

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Author: Wolfgang Huber <huber at ebi.ac.uk>, Joern Toedling <toedling at ebi.ac.uk>

Maintainer: Wolfgang Huber <huber at ebi.ac.uk>

Citation (from within R, enter citation("davidTiling")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("davidTiling")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, Genome, MicroarrayData, Saccharomyces_cerevisiae_Data
Version 1.8.0
License LGPL
Depends R (>= 2.10), Biobase(>= 2.5.5), tilingArray, GO.db
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.ebi.ac.uk/huber
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

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Package Source davidTiling_1.8.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/davidTiling/
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