To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

In most cases, you don't need to download the package archive at all.

SeqVarTools

DOI: 10.18129/B9.bioc.SeqVarTools    

Tools for variant data

Bioconductor version: Release (3.6)

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp

Maintainer: Stephanie M. Gogarten <sdmorris at uw.edu>, Xiuwen Zheng <zhengx at uw.edu>, Adrienne Stilp <amstilp at uw.edu>

Citation (from within R, enter citation("SeqVarTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqVarTools")

 

PDF R Script Introduction to SeqVarTools
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneticVariability, Genetics, SNP, Sequencing, Software
Version 1.16.0
In Bioconductor since BioC 2.13 (R-3.0) (4 years)
License GPL-3
Depends SeqArray
Imports grDevices, graphics, stats, methods, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, Biobase, logistf, dplyr, tidyr
LinkingTo
Suggests BiocGenerics, BiocStyle, RUnit, stringr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me GENESIS
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SeqVarTools_1.16.0.tar.gz
Windows Binary SeqVarTools_1.16.0.zip
Mac OS X 10.11 (El Capitan) SeqVarTools_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SeqVarTools
Package Short Url http://bioconductor.org/packages/SeqVarTools/
Package Downloads Report Download Stats

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