To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

In most cases, you don't need to download the package archive at all.

SeqVarTools

 

Tools for variant data

Bioconductor version: Release (3.1)

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng

Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>, Xiuwen Zheng <zhengx at u.washington.edu>

Citation (from within R, enter citation("SeqVarTools")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqVarTools")

 

PDF R Script Introduction to SeqVarTools
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneticVariability, Genetics, SNP, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (1.5 years)
License GPL-3
Depends SeqArray(>= 1.1.1)
Imports methods, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, VariantAnnotation
LinkingTo
Suggests BiocGenerics, BiocStyle, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SeqVarTools_1.6.0.tar.gz
Windows Binary SeqVarTools_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) SeqVarTools_1.6.0.tgz
Mac OS X 10.9 (Mavericks) SeqVarTools_1.6.0.tgz
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