To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

In most cases, you don't need to download the package archive at all.

SeqVarTools

Tools for variant data

Bioconductor version: Release (2.14)

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng

Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>, Xiuwen Zheng <zhengx at u.washington.edu>

To install this package, start R and enter:

Citation (from within R, enter citation("SeqVarTools")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqVarTools")

 

PDF R Script Introduction to SeqVarTools
PDF   Reference Manual

Details

biocViews GeneticVariability, Genetics, SNP, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends SeqArray(>= 1.1.1)
Imports methods, GenomicRanges, IRanges, GWASExactHW
Suggests BiocGenerics, RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SeqVarTools_1.2.0.tar.gz
Windows Binary SeqVarTools_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SeqVarTools_1.2.0.tgz
Mac OS X 10.9 (Mavericks) SeqVarTools_1.2.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center