shinyMethyl

This is the released version of shinyMethyl; for the devel version, see shinyMethyl.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Interactive visualization for Illumina methylation arrays

Bioconductor version: Release (3.23)

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("shinyMethyl")):

Jean-Philippe Fortin, Kasper Daniel Hansen. shinyMethyl: Interactive visualization for Illumina methylation arrays. doi:10.18129/B9.bioc.shinyMethyl, R package version 1.48.0, https://bioconductor.org/packages/shinyMethyl.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("shinyMethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyMethyl")

shinyMethyl: interactive visualization of Illumina 450K methylation arrays	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.48.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	Artistic-2.0
Depends
Imports	Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils
System Requirements
URL	https://github.com/Jfortin1/shinyMethyl
Bug Reports	https://github.com/Jfortin1/shinyMethyl

Suggests	shinyMethylData, minfiData, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	shinyMethyl_1.48.0.tar.gz
Windows Binary (x86_64)	shinyMethyl_1.48.0.zip
macOS Binary (big-sur-x86_64)	shinyMethyl_1.48.0.tgz
macOS Binary (sonoma-arm64)	shinyMethyl_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/shinyMethyl
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/shinyMethyl
Package Short Url	https://bioconductor.org/packages/shinyMethyl/
Package Downloads Report	Download Stats