DeSousa2013

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: Release (2.14)

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DeSousa2013")

To cite this package in a publication, start R and enter:

    citation("DeSousa2013")

Documentation

PDF R Script Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions
PDF   Reference Manual

Details

biocViews Bioinformatics, ExperimentData
Version 1.0.0
License Artistic-2.0
Depends R (>= 2.15)
Imports affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source DeSousa2013_1.0.0.tar.gz
Windows Binary DeSousa2013_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DeSousa2013_1.0.0.tgz
Mac OS X 10.9 (Mavericks) DeSousa2013_1.0.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center