To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("adSplit")

In most cases, you don't need to download the package archive at all.

adSplit

Annotation-Driven Clustering

Bioconductor version: Release (2.14)

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Citation (from within R, enter citation("adSplit")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("adSplit")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adSplit")

 

PDF R Script Annotation-Driven Clustering
PDF   Reference Manual

Details

biocViews Clustering, Microarray, Software
Version 1.34.0
In Bioconductor since BioC 1.8 (R-2.3)
License GPL (>= 2)
Depends R (>= 2.1.0), methods (>= 2.1.0)
Imports AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGG.db(>= 1.8.1), methods, multtest(>= 1.6.0), stats (>= 2.1.0)
Suggests golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1)
System Requirements
URL http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source adSplit_1.34.0.tar.gz
Windows Binary adSplit_1.34.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) adSplit_1.34.0.tgz
Mac OS X 10.9 (Mavericks) adSplit_1.34.0.tgz
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