To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EpiDISH")

In most cases, you don't need to download the package archive at all.

EpiDISH

DOI: 10.18129/B9.bioc.EpiDISH    

Epigenetic Dissection of Intra-Sample-Heterogeneity

Bioconductor version: Release (3.6)

EpiDISH is a R package to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.

Author: Andrew E. Teschendorff <a.teschendorff at ucl.ac.uk>, Shijie C. Zheng<shijieczheng at gmail.com>

Maintainer: Shijie Charles Zheng<shijieczheng at gmail.com>

Citation (from within R, enter citation("EpiDISH")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EpiDISH")

Documentation

HTML R Script Epigenetic Dissection of Intra-Sample-Heterogeneity - R package
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Software
Version 1.0.0
License GPL-2
Depends R (>= 3.4)
Imports MASS, e1071, quadprog
LinkingTo
Suggests roxygen2, GEOquery, BiocStyle, knitr, rmarkdown, Biobase, testthat
SystemRequirements
Enhances
URL https://github.com/sjczheng/EpiDISH
BugReports https://github.com/sjczheng/EpiDISH/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EpiDISH_1.0.0.tar.gz
Windows Binary EpiDISH_1.0.0.zip
Mac OS X 10.11 (El Capitan) EpiDISH_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EpiDISH
Package Short Url http://bioconductor.org/packages/EpiDISH/
Package Downloads Report Download Stats

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