DOI: 10.18129/B9.bioc.TPP    

Analyze thermal proteome profiling (TPP) experiments

Bioconductor version: Release (3.7)

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber

Maintainer: Dorothee Childs <dorothee.childs at>

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PDF R Script TPP_introduction_1D
PDF R Script TPP_introduction_2D
PDF R Script TPP_introduction_NPARC
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biocViews MassSpectrometry, Proteomics, Software
Version 3.8.4
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, sme, splines, stats, stringr, utils, VennDiagram, VGAM
Suggests BiocStyle, testthat
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