To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TPP")

In most cases, you don't need to download the package archive at all.

TPP

DOI: 10.18129/B9.bioc.TPP    

This is the development version of TPP; for the stable release version, see TPP.

Analyze thermal proteome profiling (TPP) experiments

Bioconductor version: Development (3.7)

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber

Maintainer: Dorothee Childs <dorothee.childs at embl.de>

Citation (from within R, enter citation("TPP")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TPP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP")

 

PDF R Script TPP_introduction_1D
PDF R Script TPP_introduction_2D
PDF R Script TPP_introduction_NPARC
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software
Version 3.7.1
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License Artistic-2.0
Depends R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, sme, splines, stats, stringr, utils, VennDiagram, VGAM
LinkingTo
Suggests BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TPP_3.7.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) TPP_3.7.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/TPP
Package Short Url http://bioconductor.org/packages/TPP/
Package Downloads Report Download Stats

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