OTUbase

Provides structure and functions for the analysis of OTU data

Bioconductor version: Release (2.14)

Provides a platform for Operational Taxonomic Unit based analysis

Author: Daniel Beck, Matt Settles, and James A. Foster

Maintainer: Daniel Beck <danlbek at gmail.com>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("OTUbase")

Citation (from within R, enter citation("OTUbase")):

Documentation

PDF R Script An introduction to OTUbase
PDF   Reference Manual

Details

biocViews DataImport, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 2.7 (R-2.12)
License Artistic-2.0
Depends R (>= 2.9.0), methods, ShortRead(>= 1.4.0), Biobase, vegan
Imports Biostrings, ShortRead, IRanges
Suggests
System Requirements
URL
Depends On Me mcaGUI
Imports Me
Suggests Me

Package Downloads

Package Source OTUbase_1.14.0.tar.gz
Windows Binary OTUbase_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) OTUbase_1.14.0.tgz
Mac OS X 10.9 (Mavericks) OTUbase_1.14.0.tgz
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