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CGHcall

This is the released version of CGHcall; for the devel version, see CGHcall.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Calling aberrations for array CGH tumor profiles.

DOI: 10.18129/B9.bioc.CGHcall

Bioconductor version: Release (3.23)

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Mark van de Wiel, Sjoerd Vosse

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHcall")):

Mark van de Wiel, Sjoerd Vosse. CGHcall: Calling aberrations for array CGH tumor profiles. doi:10.18129/B9.bioc.CGHcall, R package version 2.74.0, https://bioconductor.org/packages/CGHcall.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGHcall")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHcall")

Details

Package Archives

Follow Installation instructions to use this package in your R session.