GSRI
This is the released version of GSRI; for the devel version, see GSRI.
All Bioconductor versions of GSRI
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6
Gene Set Regulation Index
Bioconductor version: 3.23 · Package version: 2.60.0
The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).
Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer
Maintainer: Julian Gehring <jg-bioc at gmx.com>
Citation
From within R, enter citation("GSRI"):
Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer. GSRI: Gene Set Regulation Index. doi:10.18129/B9.bioc.GSRI, R package version 2.60.0, https://bioconductor.org/packages/GSRI.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSRI")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.60.0 |
| License | GPL-3 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.6 (R-2.11) (16 years) |
| Downloads rank | 807 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneRegulation, GeneSetEnrichment, Microarray, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/GSRI/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSRI")| Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GSRI_2.60.0.tar.gz |
| Windows binary (x86_64) | GSRI_2.60.0.zip |
| macOS binary (arm64) | GSRI_2.60.0.tgz |
| macOS binary (x86_64) | GSRI_2.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSRI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSRI |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.14.2), fdrtool
Imports: methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les (>= 1.1.6)
Suggests: limma, hgu95av2.db
Enhances: parallel