To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mBPCR")

In most cases, you don't need to download the package archive at all.

mBPCR

 

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: Release (3.1)

Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Citation (from within R, enter citation("mBPCR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mBPCR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mBPCR")

 

PDF R Script mBPCR
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, SNP, Software, aCGH
Version 1.22.0
In Bioconductor since BioC 2.5 (R-2.10) (6 years)
License GPL (>= 2)
Depends oligoClasses, SNPchip
Imports Biobase
LinkingTo
Suggests xtable
SystemRequirements
Enhances
URL http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mBPCR_1.22.0.tar.gz
Windows Binary mBPCR_1.22.0.zip
Mac OS X 10.6 (Snow Leopard) mBPCR_1.22.0.tgz
Mac OS X 10.9 (Mavericks) mBPCR_1.22.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/mBPCR/tree/release-3.1
Package Short Url http://bioconductor.org/packages/mBPCR/
Package Downloads Report Download Stats

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