wateRmelon

Illumina 450 methylation array normalization and metrics

Bioconductor version: Development (3.0)

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi, minfi and IMA packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic

Maintainer: Leo <Leonard.Schalkwyk at kcl.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("wateRmelon")

To cite this package in a publication, start R and enter:

    citation("wateRmelon")

Documentation

PDF R Script Package
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.5.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL-3
Depends R (>= 2.10), limma, methods, matrixStats, methylumi, lumi, IlluminaHumanMethylation450k.db, ROC
Imports
Suggests RPMM
System Requirements
URL
Depends On Me
Imports Me ChAMP
Suggests Me

Package Downloads

Package Source wateRmelon_1.5.0.tar.gz
Windows Binary wateRmelon_1.5.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) wateRmelon_1.5.0.tgz
Mac OS X 10.9 (Mavericks)
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