TileDBArray

DOI: 10.18129/B9.bioc.TileDBArray    

Using TileDB as a DelayedArray Backend

Bioconductor version: Release (3.12)

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("TileDBArray")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TileDBArray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TileDBArray")

 

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Text   LICENSE

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License MIT + file LICENSE
Depends DelayedArray(>= 0.15.16)
Imports methods, Rcpp, tiledb, S4Vectors
LinkingTo Rcpp
Suggests knitr, Matrix, rmarkdown, BiocStyle, BiocParallel, testthat
SystemRequirements
Enhances
URL https://github.com/LTLA/TileDBArray
BugReports https://github.com/LTLA/TileDBArray
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TileDBArray_1.0.0.tar.gz
Windows Binary TileDBArray_1.0.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) TileDBArray_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TileDBArray
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TileDBArray
Package Short Url https://bioconductor.org/packages/TileDBArray/
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