metapod

DOI: 10.18129/B9.bioc.metapod    

Meta-Analyses on P-Values of Differential Analyses

Bioconductor version: Release (3.14)

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("metapod")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metapod")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metapod")

 

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Details

biocViews DifferentialPeakCalling, MultipleComparison, Software
Version 1.2.0
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License GPL-3
Depends
Imports Rcpp
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me csaw, mumosa, scran
Suggests Me TSCAN
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metapod_1.2.0.tar.gz
Windows Binary metapod_1.2.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) metapod_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/metapod
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metapod
Package Short Url https://bioconductor.org/packages/metapod/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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