To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")

In most cases, you don't need to download the package archive at all.

trackViewer

 

   

A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot

Bioconductor version: Release (3.4)

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

Author: Jianhong Ou, Yong-Xu Wang, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("trackViewer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")

Documentation

HTML R Script trackViewer Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Visualization
Version 1.10.2
In Bioconductor since BioC 2.14 (R-3.1) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.1.0), grDevices, methods, GenomicRanges, grid
Imports GenomicAlignments, GenomicFeatures, Gviz, pbapply, Rsamtools, rtracklayer, S4Vectors, scales, tools, IRanges, AnnotationDbi, grImport
LinkingTo
Suggests biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocGenerics, BiocStyle, knitr, VariantAnnotation
SystemRequirements
Enhances
URL
Depends On Me coMET
Imports Me
Suggests Me ChIPpeakAnno
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source trackViewer_1.10.2.tar.gz
Windows Binary trackViewer_1.10.2.zip
Mac OS X 10.9 (Mavericks) trackViewer_1.10.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/trackViewer/tree/release-3.4
Package Short Url http://bioconductor.org/packages/trackViewer/
Package Downloads Report Download Stats

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