To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ivygapSE")

In most cases, you don't need to download the package archive at all.

ivygapSE

DOI: 10.18129/B9.bioc.ivygapSE    

A SummarizedExperiment for Ivy-GAP data

Bioconductor version: Release (3.6)

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ivygapSE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ivygapSE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ivygapSE")

 

PDF R Script ivygapSE -- SummarizedExperiment for Ivy-GAP
PDF   Reference Manual

Details

biocViews Software, Survival, Transcription, Visualization
Version 1.0.0
License Artistic-2.0
Depends R (>= 3.4.0), SummarizedExperiment
Imports shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ivygapSE_1.0.0.tar.gz
Windows Binary ivygapSE_1.0.0.zip
Mac OS X 10.11 (El Capitan) ivygapSE_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ivygapSE
Package Short Url http://bioconductor.org/packages/ivygapSE/
Package Downloads Report Download Stats

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