HelloRanges
Introduce *Ranges to bedtools users
Bioconductor version: 3.23 · Package version: 1.38.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HelloRanges")Details
| Maintainer | Michael Lawrence <lawremi@gmail.com> |
| Author | Michael Lawrence |
| License | GPL (>= 2) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Coverage, DataImport, GenomeAnnotation, SequenceMatching, Sequencing, Software, VariantAnnotation |
| Package Short Url | https://bioconductor.org/packages/HelloRanges/ |
Citation
From within R, enter citation("HelloRanges"):
Michael Lawrence. HelloRanges: Introduce *Ranges to bedtools users. doi:10.18129/B9.bioc.HelloRanges, R package version 1.38.0, https://bioconductor.org/packages/HelloRanges.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | HelloRanges_1.38.0.tar.gz |
| Windows binary (x86_64) | HelloRanges_1.38.0.zip |
| macOS binary (arm64) | HelloRanges_1.38.0.tgz |
| macOS binary (x86_64) | HelloRanges_1.38.0.tgz |
Dependencies
Depends: methods, BiocGenerics, S4Vectors (>= 0.17.39), IRanges (>= 2.13.12), GenomicRanges (>= 1.31.10), Biostrings (>= 2.41.3), BSgenome, GenomicFeatures (>= 1.31.5), VariantAnnotation (>= 1.19.3), Rsamtools, GenomicAlignments (>= 1.15.7), rtracklayer (>= 1.33.8), Seqinfo, SummarizedExperiment, BiocIO
Imports: docopt, stats, tools, utils
Suggests: GenomeInfoDb, HelloRangesData, BiocStyle, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene