GenomicDistributionsData

DOI: 10.18129/B9.bioc.GenomicDistributionsData    

Reference data for GenomicDistributions package

Bioconductor version: Release (3.14)

This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.

Author: Michal Stolarczyk [aut], Kristyna Kupkova [aut, cre], Jose Verdezoto [aut], John Lawson [ctb], Jason Smith [ctb], Nathan C. Sheffield [ctb]

Maintainer: Kristyna Kupkova <kristynakupkova at gmail.com>

Citation (from within R, enter citation("GenomicDistributionsData")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicDistributionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDistributionsData")

 

HTML R Script 1. Getting started with GenomicDistributionsData
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, ExperimentHub, Genome
Version 1.1.0
License BSD_2_clause + file LICENSE
Depends R (>= 4.1)
Imports ExperimentHub(>= 1.14.0), AnnotationHub, AnnotationFilter, data.table, utils, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, ensembldb
LinkingTo
Suggests knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
BugReports http://github.com/databio/GenomicDistributionsData
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicDistributionsData_1.1.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/GenomicDistributionsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicDistributionsData
Package Short Url https://bioconductor.org/packages/GenomicDistributionsData/
Package Downloads Report Download Stats

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