BSgenome

Infrastructure for Biostrings-based genome data packages

Infrastructure shared by all the Biostrings-based genome data packages

Author	Herve Pages
Maintainer	H. Pages

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("BSgenome")

Efficient genome searching with Biostrings and the BSgenome data packages	PDF	R Script
How to forge a BSgenome data package	PDF	R Script
Reference Manual

biocViews	Genetics , Infrastructure
Depends	R , methods , IRanges , GenomicRanges , Biostrings
Imports
Suggests	RUnit , BSgenome.Celegans.UCSC.ce2 , BSgenome.Hsapiens.UCSC.hg18 , SNPlocs.Hsapiens.dbSNP.20071016 , hgu95av2probe , Biobase
System Requirements
License	Artistic-2.0
URL
Depends On Me	ChIPpeakAnno , PICS , chipseq , rGADEM
Imports Me	ChIPpeakAnno , PICS , charm , chipseq , girafe , rtracklayer
Suggests Me	Biostrings , GeneRegionScan , GenomicFeatures , GenomicRanges , oneChannelGUI