To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regsplice")

In most cases, you don't need to download the package archive at all.

regsplice

 

   

L1-regularization based methods for detection of differential splicing

Bioconductor version: Release (3.5)

Statistical methods for detection of differential splicing (differential exon usage) in RNA-seq and exon microarray data, using L1-regularization (lasso) to improve power.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukmweber at gmail.com>

Citation (from within R, enter citation("regsplice")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regsplice")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("regsplice")

 

PDF R Script Example workflow for regsplice package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, ExonArray, ExperimentalDesign, Microarray, RNASeq, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 3.4 (R-3.3) (0.5 years)
License MIT + file LICENSE
Depends
Imports glmnet, SummarizedExperiment, S4Vectors, limma, edgeR, stats, pbapply, utils, methods
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/lmweber/regsplice
BugReports https://github.com/lmweber/regsplice/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source regsplice_1.2.0.tar.gz
Windows Binary regsplice_1.2.0.zip
Mac OS X 10.11 (El Capitan) regsplice_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/regsplice/tree/release-3.5
Package Short Url http://bioconductor.org/packages/regsplice/
Package Downloads Report Download Stats

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