HiCDataHumanIMR90

DOI: 10.18129/B9.bioc.HiCDataHumanIMR90    

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Bioconductor version: Release (3.7)

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

Author: Nicolas Servant

Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>

Citation (from within R, enter citation("HiCDataHumanIMR90")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataHumanIMR90")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataHumanIMR90")

 

PDF R Script HiC Data Human Fibroblast Dixon et al. 2012
PDF   Reference Manual

Details

biocViews ExperimentData, GEO, Genome, Homo_sapiens_Data
Version 0.114.0
License GPL-3
Depends R (>= 2.10)
Imports
LinkingTo
Suggests HiTC
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me HiTC
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiCDataHumanIMR90_0.114.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HiCDataHumanIMR90
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiCDataHumanIMR90
Package Short Url http://bioconductor.org/packages/HiCDataHumanIMR90/
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