To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rbowtie")

In most cases, you don't need to download the package archive at all.

Rbowtie

 

R bowtie wrapper

Bioconductor version: Release (3.1)

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Author: Florian Hahne, Anita Lerch, Michael B Stadler

Maintainer: Michael Stadler <michael.stadler at fmi.ch>

Citation (from within R, enter citation("Rbowtie")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rbowtie")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbowtie")

 

PDF R Script An introduction to Rbowtie
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Alignment, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 2.12 (R-3.0) (2 years)
License Artistic-1.0 | file LICENSE
Depends
Imports
LinkingTo
Suggests parallel
SystemRequirements GNU make
Enhances
URL
Depends On Me QuasR
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Rbowtie_1.8.0.tar.gz
Windows Binary Rbowtie_1.8.0.zip (64-bit only)
Mac OS X 10.6 (Snow Leopard) Rbowtie_1.8.0.tgz
Mac OS X 10.9 (Mavericks) Rbowtie_1.8.0.tgz
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