• Home
• Bioconductor 3.23
• Software Packages
• Rbowtie

Rbowtie

This is the released version of Rbowtie; for the devel version, see Rbowtie.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

R bowtie wrapper

DOI: 10.18129/B9.bioc.Rbowtie

Bioconductor version: Release (3.23)

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Author: Florian Hahne [aut], Anita Lerch [aut], Michael Stadler [aut, cre] ORCID: 0000-0002-2269-4934

Maintainer: Michael Stadler <michael.stadler at fmi.ch>

Citation (from within R, enter citation("Rbowtie")):

Florian Hahne, Anita Lerch, Michael Stadler. Rbowtie: R bowtie wrapper. doi:10.18129/B9.bioc.Rbowtie, R package version 1.52.0, https://bioconductor.org/packages/Rbowtie.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rbowtie")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbowtie")

Details

Package Archives

Follow Installation instructions to use this package in your R session.