clustifyrdatahub

DOI: 10.18129/B9.bioc.clustifyrdatahub    

External data sets for clustifyr in ExperimentHub

Bioconductor version: Release (3.12)

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr to assign cell type identities.

Author: Rui Fu [aut, cre] , Kent Riemondy [aut] , RNA Bioscience Initiative [fnd], Austin Gillen [ctb] , Jay Hesselberth [ctb] , Sidhant Puntambekar [ctb]

Maintainer: Rui Fu <raysinensis at gmail.com>

Citation (from within R, enter citation("clustifyrdatahub")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")

 

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Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version 1.0.0
License MIT + file LICENSE
Depends R (>= 4.0), ExperimentHub
Imports utils
LinkingTo
Suggests clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle
SystemRequirements
Enhances
URL https://rnabioco.github.io/clustifyrdatahub
BugReports https://github.com/rnabioco/clustifyrdatahub/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clustifyrdatahub_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/clustifyrdatahub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clustifyrdatahub
Package Short Url https://bioconductor.org/packages/clustifyrdatahub/
Package Downloads Report Download Stats

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