To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Oscope")

In most cases, you don't need to download the package archive at all.

Oscope

DOI: 10.18129/B9.bioc.Oscope    

Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Bioconductor version: Release (3.6)

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

Author: Ning Leng

Maintainer: Ning Leng <lengning1 at gmail.com>

Citation (from within R, enter citation("Oscope")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Oscope")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Oscope")

 

PDF R Script Oscope_vigette
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.8.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License Artistic-2.0
Depends EBSeq, cluster, testthat, BiocParallel
Imports
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Oscope_1.8.0.tar.gz
Windows Binary Oscope_1.8.0.zip
Mac OS X 10.11 (El Capitan) Oscope_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Oscope
Package Short Url http://bioconductor.org/packages/Oscope/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: