MetaboCoreUtils

DOI: 10.18129/B9.bioc.MetaboCoreUtils    

Core Utils for Metabolomics Data

Bioconductor version: Release (3.14)

MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.

Author: Johannes Rainer [aut, cre] , Michael Witting [aut] , Andrea Vicini [aut]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("MetaboCoreUtils")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaboCoreUtils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaboCoreUtils")

 

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Details

biocViews Infrastructure, MassSpectrometry, Metabolomics, Software
Version 1.2.0
In Bioconductor since BioC 3.13 (R-4.1) (0.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports stringr, utils, MsCoreUtils
LinkingTo
Suggests BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/RforMassSpectrometry/MetaboCoreUtils
BugReports https://github.com/RforMassSpectrometry/MetaboCoreUtils/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaboCoreUtils_1.2.0.tar.gz
Windows Binary MetaboCoreUtils_1.2.0.zip
macOS 10.13 (High Sierra) MetaboCoreUtils_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaboCoreUtils
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaboCoreUtils
Package Short Url https://bioconductor.org/packages/MetaboCoreUtils/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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