tidySingleCellExperiment

DOI: 10.18129/B9.bioc.tidySingleCellExperiment    

Brings SingleCellExperiment to the Tidyverse

Bioconductor version: Release (3.12)

tidySingleCellExperiment is an adapter that abstracts the 'SingleCellExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidySingleCellExperiment")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tidySingleCellExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidySingleCellExperiment")

 

HTML R Script Overview of the tidySingleCellExperiment package
PDF   Reference Manual

Details

biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends R (>= 4.0.0), SingleCellExperiment
Imports dplyr, tibble, tidyr, ggplot2, plotly, magrittr, rlang, purrr, lifecycle, methods, utils, S4Vectors, tidyselect, ellipsis, pillar, stringr, cli, fansi
LinkingTo
Suggests BiocStyle, testthat, knitr, markdown, SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph, GGally, Matrix, uwot, celldex, dittoSeq
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tidySingleCellExperiment_1.0.0.tar.gz
Windows Binary tidySingleCellExperiment_1.0.0.zip
macOS 10.13 (High Sierra) tidySingleCellExperiment_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tidySingleCellExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidySingleCellExperiment
Package Short Url https://bioconductor.org/packages/tidySingleCellExperiment/
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