LinkHD

DOI: 10.18129/B9.bioc.LinkHD    

LinkHD: a versatile framework to explore and integrate heterogeneous data

Bioconductor version: Release (3.10)

Here we present Link-HD, an approach to integrate heterogeneous datasets, as a generalization of STATIS-ACT (“Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux”), a family of methods to join and compare information from multiple subspaces. However, STATIS-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection.

Author: Laura M. Zingaretti [aut, cre]

Maintainer: "Laura M Zingaretti" <m.lau.zingaretti at gmail.com>

Citation (from within R, enter citation("LinkHD")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LinkHD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LinkHD")

 

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PDF   Reference Manual

Details

biocViews Classification, MultipleComparison, Regression, Software
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-3
Depends R (>= 3.6.0), methods, ggplot2, stats
Imports scales, cluster, graphics, ggpubr, gridExtra, vegan, rio, MultiAssayExperiment, emmeans, reshape2, data.table
LinkingTo
Suggests MASS (>= 7.3.0), knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LinkHD_1.0.0.tar.gz
Windows Binary LinkHD_1.0.0.zip
Mac OS X 10.11 (El Capitan) LinkHD_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LinkHD
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LinkHD
Package Short Url https://bioconductor.org/packages/LinkHD/
Package Downloads Report Download Stats

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