To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("erccdashboard")

In most cases, you don't need to download the package archive at all.

erccdashboard

 

   

Assess Differential Gene Expression Experiments with ERCC Controls

Bioconductor version: Release (3.3)

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Author: Sarah Munro, Steve Lund

Maintainer: Sarah Munro <sarah.munro at nist.gov>

Citation (from within R, enter citation("erccdashboard")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("erccdashboard")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("erccdashboard")

 

PDF R Script erccdashboard examples
PDF   Reference Manual
Text   NEWS

Details

biocViews AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray
Version 1.6.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL (>=2)
Depends R (>= 3.1), ggplot2 (>= 1.0.1), gridExtra (>= 2.0.0)
Imports edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, QuasiSeq, qvalue, reshape2, ROCR, scales, stringr
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.nist.gov/mml/bbd/erccdashboard.cfm https://github.com/usnistgov/erccdashboard http://tinyurl.com/erccsrm
BugReports https://github.com/usnistgov/erccdashboard/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source erccdashboard_1.6.0.tar.gz
Windows Binary erccdashboard_1.6.0.zip
Mac OS X 10.9 (Mavericks) erccdashboard_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/erccdashboard/tree/release-3.3
Package Short Url http://bioconductor.org/packages/erccdashboard/
Package Downloads Report Download Stats

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