To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("erccdashboard")

In most cases, you don't need to download the package archive at all.

erccdashboard

 

   

Assess Differential Gene Expression Experiments with ERCC Controls

Bioconductor version: Release (3.3)

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Author: Sarah Munro, Steve Lund

Maintainer: Sarah Munro <sarah.munro at nist.gov>

Citation (from within R, enter citation("erccdashboard")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("erccdashboard")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("erccdashboard")

 

PDF R Script erccdashboard examples
PDF   Reference Manual

Details

biocViews AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray
Version 1.6.0
In Bioconductor since BioC 3.0 (R-3.1) (2 years)
License GPL (>=2)
Depends R (>= 3.1), ggplot2 (>= 1.0.1), gridExtra (>= 2.0.0)
Imports edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, QuasiSeq, qvalue, reshape2, ROCR, scales, stringr
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.nist.gov/mml/bbd/erccdashboard.cfm https://github.com/usnistgov/erccdashboard http://tinyurl.com/erccsrm
BugReports https://github.com/usnistgov/erccdashboard/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source erccdashboard_1.6.0.tar.gz
Windows Binary erccdashboard_1.6.0.zip
Mac OS X 10.9 (Mavericks) erccdashboard_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/erccdashboard/tree/release-3.3
Package Short Url http://bioconductor.org/packages/erccdashboard/
Package Downloads Report Download Stats

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