To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("qvalue")

In most cases, you don't need to download the package archive at all.

qvalue

Q-value estimation for false discovery rate control

Bioconductor version: Release (3.0)

This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining.

Author: Alan Dabney and John D. Storey <jstorey at princeton.edu>

Maintainer: John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("qvalue")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("qvalue")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qvalue")

 

PDF R Script qvalue Tutorial
PDF   Reference Manual

Details

biocViews MultipleComparison, Software
Version 1.40.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL
Depends
Imports graphics, grDevices, stats
Suggests tcltk
System Requirements
URL
Depends On Me anota, CancerMutationAnalysis, ChimpHumanBrainData, DEGseq, DrugVsDisease, ESNSTCC, metaseqR, netresponse, prot2D, r3Cseq, SSPA, webbioc
Imports Me anota, derfinder, DOSE, EnrichmentBrowser, erccdashboard, msmsTests, Rnits, sRAP, synapter, trigger, webbioc
Suggests Me LBE, maanova, PREDA, RNAinteractMAPK

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source qvalue_1.40.0.tar.gz
Windows Binary qvalue_1.40.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) qvalue_1.40.0.tgz
Mac OS X 10.9 (Mavericks) qvalue_1.40.0.tgz
Browse/checkout source (username/password: readonly)
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