DropletTestFiles

DOI: 10.18129/B9.bioc.DropletTestFiles    

Test Files for Single-Cell Droplet Utilities

Bioconductor version: Release (3.12)

Assorted files generated from droplet-based single-cell protocols, to be used for testing functions in DropletUtils. Primarily intended for storing files that directly come out of processing pipelines like 10X Genomics' CellRanger software, prior to the formation of a SingleCellExperiment object. Unlike other packages, this is not designed to provide objects that are immediately ready for analysis.

Author: Aaron Lun [ctb, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("DropletTestFiles")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DropletTestFiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DropletTestFiles")

 

HTML R Script Test files for droplet-based single-cell utilities
PDF   Reference Manual

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version 1.0.0
License GPL-3
Depends
Imports utils, ExperimentHub, AnnotationHub, S4Vectors
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, DropletUtils
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me DropletUtils
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DropletTestFiles_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/DropletTestFiles
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DropletTestFiles
Package Short Url https://bioconductor.org/packages/DropletTestFiles/
Package Downloads Report Download Stats

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