To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("eiR")

In most cases, you don't need to download the package archive at all.

eiR

 

Accelerated similarity searching of small molecules

Bioconductor version: Release (3.1)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("eiR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eiR")

 

HTML R Script eiR
PDF   Reference Manual
Text   README
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, DataImport, Infrastructure, Proteomics, Software
Version 1.8.1
In Bioconductor since BioC 2.12 (R-3.0) (2 years)
License Artistic-2.0
Depends R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics
LinkingTo BH
Suggests RCurl, snow, BiocStyle, knitcitations, knitr, knitrBootstrap
SystemRequirements GSL (>=1.14) http://www.gnu.org/software/gsl/
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source eiR_1.8.1.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) eiR_1.8.1.tgz
Mac OS X 10.9 (Mavericks) eiR_1.8.1.tgz
Browse/checkout source (username/password: readonly)
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