To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("eiR")

In most cases, you don't need to download the package archive at all.

eiR

 

   

Accelerated similarity searching of small molecules

Bioconductor version: Release (3.3)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan, Yiqun Cao and Tyler Backman

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("eiR")

Documentation

HTML R Script eiR
PDF   Reference Manual

Details

biocViews BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version 1.12.2
In Bioconductor since BioC 2.12 (R-3.0) (3.5 years)
License Artistic-2.0
Depends R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics
LinkingTo BH
Suggests RCurl, snow, BiocStyle, knitcitations, knitr, knitrBootstrap
SystemRequirements GSL (>=1.14) http://www.gnu.org/software/gsl/
Enhances
URL https://github.com/girke-lab/eiR
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source eiR_1.12.2.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks) eiR_1.12.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/eiR/tree/release-3.3
Package Short Url http://bioconductor.org/packages/eiR/
Package Downloads Report Download Stats

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