flowAI

DOI: 10.18129/B9.bioc.flowAI    

Automatic and interactive quality control for flow cytometry data

Bioconductor version: Release (3.8)

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco, Hao Chen

Maintainer: Gianni Monaco <gianni.monaco at unibas.ch>

Citation (from within R, enter citation("flowAI")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("flowAI", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowAI")

 

HTML R Script Automatic and GUI methods to do quality control on Flow cytometry Data
PDF   Reference Manual
Text   NEWS

Details

biocViews BiomedicalInformatics, FlowCytometry, QualityControl, Software
Version 1.12.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown
LinkingTo
Suggests testthat, shiny
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowAI_1.12.0.tar.gz
Windows Binary flowAI_1.12.0.zip
Mac OS X 10.11 (El Capitan) flowAI_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowAI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowAI
Package Short Url http://bioconductor.org/packages/flowAI/
Package Downloads Report Download Stats

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