seqLogo

Sequence logos for DNA sequence alignments

Bioconductor version: Release (2.14)

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author: Oliver Bembom

Maintainer: Oliver Bembom <oliver.bembom at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("seqLogo")

To cite this package in a publication, start R and enter:

    citation("seqLogo")

Documentation

PDF R Script Sequence logos for DNA sequence alignments
PDF   Reference Manual

Details

biocViews SequenceMatching, Software
Version 1.30.0
In Bioconductor since BioC 2.0 (R-2.5)
License LGPL (>= 2)
Depends methods, grid
Imports
Suggests
System Requirements
URL
Depends On Me motifRG, rGADEM, spliceSites
Imports Me motifRG, PWMEnrich, rGADEM, TFBSTools
Suggests Me BCRANK, MotifDb

Package Downloads

Package Source seqLogo_1.30.0.tar.gz
Windows Binary seqLogo_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) seqLogo_1.30.0.tgz
Mac OS X 10.9 (Mavericks)
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