BCRANK

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: Release (2.14)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("BCRANK")

To cite this package in a publication, start R and enter:

    citation("BCRANK")

Documentation

PDF R Script BCRANK
PDF   Reference Manual

Details

biocViews GeneRegulation, MotifDiscovery, Software
Version 1.26.0
In Bioconductor since BioC 2.2 (R-2.7)
License GPL-2
Depends methods
Imports Biostrings
Suggests seqLogo
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source BCRANK_1.26.0.tar.gz
Windows Binary BCRANK_1.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BCRANK_1.26.0.tgz
Mac OS X 10.9 (Mavericks)
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