To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BCRANK")

In most cases, you don't need to download the package archive at all.

BCRANK

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: Release (3.0)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Citation (from within R, enter citation("BCRANK")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BCRANK")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

 

PDF R Script BCRANK
PDF   Reference Manual

Details

biocViews GeneRegulation, MotifDiscovery, Software
Version 1.28.0
In Bioconductor since BioC 2.2 (R-2.7)
License GPL-2
Depends methods
Imports Biostrings
Suggests seqLogo
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BCRANK_1.28.0.tar.gz
Windows Binary BCRANK_1.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BCRANK_1.28.0.tgz
Mac OS X 10.9 (Mavericks) BCRANK_1.28.0.tgz
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