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DirichletMultinomial

 

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

Bioconductor version: Release (3.1)

Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.

Author: Martin Morgan <mtmorgan at fhcrc.org>

Maintainer: Martin Morgan <mtmorgan at fhcrc.org>

Citation (from within R, enter citation("DirichletMultinomial")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DirichletMultinomial")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DirichletMultinomial")

 

PDF An introduction to DirichletMultinomial
PDF   Reference Manual

Details

biocViews Classification, Clustering, Microbiome, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 2.11 (R-2.15) (2.5 years)
License LGPL-3
Depends S4Vectors, IRanges
Imports stats4, methods
LinkingTo
Suggests lattice, parallel, MASS, RColorBrewer, xtable
SystemRequirements gsl
Enhances
URL
Depends On Me
Imports Me TFBSTools
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DirichletMultinomial_1.10.0.tar.gz
Windows Binary DirichletMultinomial_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DirichletMultinomial_1.10.0.tgz
Mac OS X 10.9 (Mavericks) DirichletMultinomial_1.10.0.tgz
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