To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HD2013SGI")

In most cases, you don't need to download the package archive at all.

HD2013SGI

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Bioconductor version: Release (3.1)

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

Author: Bernd Fischer

Maintainer: Bernd Fischer <b.fischer at dkfz.de>

Citation (from within R, enter citation("HD2013SGI")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HD2013SGI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HD2013SGI")

 

PDF R Script HD2013SGI
PDF   Reference Manual

Details

biocViews CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData
Version 1.8.0
License Artistic-2.0
Depends R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage
Imports
LinkingTo
Suggests BiocStyle
SystemRequirements GNU make
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HD2013SGI_1.8.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Browse/checkout source (username/password: readonly)
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