Workflow Package: RNAseq123

RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR

Bioconductor version: Release (3.8)

R package that supports the F1000Research workflow article on RNA-seq analysis using limma, Glimma and edgeR by Law et al. (2016).

Author: Charity Law, Monther Alhamdoosh, Shian Su, Xueyi Dong, Luyi Tian, Gordon Smyth and Matthew Ritchie

Maintainer: Matthew Ritchie <mritchie at wehi.edu.au>

Citation (from within R, enter citation("RNAseq123")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RNAseq123", version = "3.8")

Documentation

To view available workflows for the version of this package installed in your system, start R and enter:

browseVignettes("RNAseq123")

 

HTML R Script RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR (Chinese version)
HTML R Script RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR (English version)

Details

biocViews GeneExpressionWorkflow, Workflow
Version 1.4.0
License Artistic-2.0
Depends R (>= 3.3.0), Glimma(>= 1.1.9), limma, edgeR, gplots, RColorBrewer, Mus.musculus
Imports
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL http://f1000research.com/articles/5-1408/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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