fourDNData

This is the released version of fourDNData; for the devel version, see fourDNData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

4DN data package

Bioconductor version: Release (3.23)

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("fourDNData")):

Jacques Serizay. fourDNData: 4DN data package. doi:10.18129/B9.bioc.fourDNData, R package version 1.12.0, https://bioconductor.org/packages/fourDNData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fourDNData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fourDNData")

fourDNData	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, SequencingData
Version	1.12.0
In Bioconductor since	BioC 3.17 (R-4.3) (3.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.2)
Imports	BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools
System Requirements
URL	https://github.com/js2264/fourDNData
Bug Reports	https://github.com/js2264/fourDNData/issues

Suggests	rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fourDNData_1.12.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/fourDNData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/fourDNData
Package Short Url	https://bioconductor.org/packages/fourDNData/
Package Downloads Report	Download Stats